Boğaziçi CT3

Device Name / Brand / Model
• Name: Laser Scanning Confocal Microscope
• Brand: Leica
• Model: STELLARIS 5

Overview
A laser scanning confocal microscope is one of the most advanced forms of fluorescence imaging technology. It uses laser beams to generate high-resolution, high-contrast images. By employing a pinhole (aperture) placed at the image plane, out-of-focus light is rejected and only light originating from the focal plane is detected, producing sharp optical sections. This system is used to analyze the localization and distribution of intracellular structures in fluorescence-labeled samples. It also enables time-dependent tracking of molecular dynamics in live cells, allowing real-time observation of dynamic biological processes. In addition, Z-stack acquisition supports 3D imaging and digital reconstruction of tissues and intracellular organelles for clearer structural analysis. With a CO₂- and temperature-controlled incubator unit, the system enables long-term observation of live-cell culture dynamics, improving efficiency and reliability in live-cell imaging experiments.

Purpose / Output
• High-resolution, high-contrast confocal fluorescence imaging of labeled samples
• Optical sectioning by collecting signal selectively from the focal plane
• 3D imaging and digital reconstruction via Z-stack acquisition
• Real-time monitoring of time-dependent dynamics in live cells (live-cell imaging)

Application Areas
• Cell and molecular biology studies
• Cancer research
• Neuroscience studies
• Developmental biology
• Immunological studies
• Pharmacology and toxicology studies
• Tissue engineering and regenerative medicine

Highlights
• Broad spectral imaging with WLL (485–790 nm) plus a 405 nm diode laser for multi-fluorophore imaging
• Advanced experiment modalities: FRAP, FLIP, photoactivation, photoconversion, and photobleaching
• Long-term live-cell imaging supported by CO₂- and temperature-controlled incubation infrastructure

Technical Specifications

Feature Value / Description
Laser sources WLL Laser (485–790 nm) and Diode Laser (405 nm)
Multi-fluorophore imaging Simultaneous imaging of multiple fluorescent dyes in the same sample
Objectives / magnification 5X, 10X, 20X, 40X, 63X (5 objectives)
Experiment modalities FRAP, FLIP, photoactivation, photoconversion, photobleaching
Analysis Förster Resonance Energy Transfer (FRET) analysis
Filters DAPI, FITC, CFP, Cy5, Rhod (5 filter sets)
Detectors Power Hybrid Detectors
Imaging modes Brightfield (BF) imaging
Image resolution 8192 × 8192 pixels
3D imaging Z-stack acquisition for 3D imaging
Data depth 16-bit data depth
Live-cell environment Temperature- and humidity-controlled incubator setup + CO₂ control
Motorization Fully motorized hardware

Contact / Service Request
For service requests: you may email [email protected]
. (Please specify the sample type, purpose, and preferred date range.)